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When an experimental design is developed, one of the main things to check is whether the resulting clusters follow some specific rules, like being alternatively sorted (in accordance with the next sequencing lane sequence) or whether they show some sort of temporal regularity. PermutMatrix takes care of this, allowing for a quick and intuitive analysis of the clustering pattern. In this example we will perform a circular clustering, indicating that the lanes 1, 2, 3, 4 and 9 are to be clustered as a

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